InSituCNV
=========

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   installation
   quickstart
   usage
   api
   tutorials
   references

Introduction
------------

Reusable notebook workflow for inferring copy-number variation (CNV) profiles
from image-based spatial transcriptomics data.

This package provides a general workflow used in
*In Situ* Inference of Copy Number Variations in Image-Based Spatial
Transcriptomics by Jensen et al.

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`