Installation

InSituCNV requires Python 3.10 or later. Install the released package from PyPI when it is available:

pip install insitucnv

For development, install the package from a local checkout in editable mode:

git clone https://github.com/Moldia/InSituCNV.git
cd InSituCNV
pip install -e ".[dev,docs]"

To build the documentation locally:

sphinx-build -b html docs docs/_build/html

To build source and wheel distributions:

python -m build

Requirements

InSituCNV requires Python 3.10 or later and depends on several key packages:

• scanpy

• infercnvpy

• scvelo

• anndata