insitucnv.workflow

Functions

resolve_reference_categories(adata, ...[, ...])

Choose non-tumor reference categories for inferCNV.

run_insitucnv(adata, output_dir, reference_key)

Run the core InSituCNV workflow on a prepared AnnData object.

select_best_resolution(metrics)

Select a Leiden resolution from the metrics returned by find_optimal_clustering.